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Transcriptome and genome sequencing uncovers functional variation in humans. Nature 501: 506-11, 2013.  [Article] 

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2. Bava FA, Eliscovich C, Ferreira PG, Miñana B, Ben-Dov C, Guigó R, Valcárcel J, Méndez R

CPEB1 coordinates alternative 3'-UTR formation with translational regulation. Nature 495: 121-5, 2013.  [Article] 

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Landscape of X chromosome inactivation across human tissues. Nature 550: 244-248, 2017.  [Article] 

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The impact of rare variation on gene expression across tissues. Nature 550: 239-243, 2017.  [Article] 

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Putative cis-regulatory drivers in colorectal cancer. Nature 512: 87-90, 2014.  [Article] 

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An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74, 2012.  [Article] 

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Human genomics. The human transcriptome across tissues and individuals. Science (New York, N.Y.) 348: 660-5, 2015.  [Article] 

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12. Novoa I, Gallego J, Ferreira PG, Mendez R

Mitotic cell-cycle progression is regulated by CPEB1 and CPEB4-dependent translational control. Nature cell biology 12: 447-56, 2010.  [Article] 

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Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome research 24: 212-26, 2014.  [Article] 

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14. Ferreira PG, Muñoz-Aguirre M, Reverter F, Sá Godinho CP, Sousa A, Amadoz A, Sodaei R, Hidalgo MR, Pervouchine D, Carbonell-Caballero J, Nurtdinov R, Breschi A, Amador R, Oliveira P, Çubuk C, Curado J, Aguet F, Oliveira C, Dopazo J, Sammeth M, Ardlie KG, Guigó R

The effects of death and post-mortem cold ischemia on human tissue transcriptomes. Nature communications 9: 490, 2018.  [Article] 

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Sporadic and reversible chromothripsis in chronic lymphocytic leukemia revealed by longitudinal genomic analysis. Leukemia 29: 758, 2015.  [Correction] 

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16. Monlong J, Calvo M, Ferreira PG, Guigó R

Identification of genetic variants associated with alternative splicing using sQTLseekeR. Nature communications 5: 4698, 2014.  [Article] 

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17. Ferreira PG, Patalano S, Chauhan R, Ffrench-Constant R, Gabaldón T, Guigó R, Sumner S

Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes. Genome biology 14: R20, 2013.  [Article] 

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Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. Proceedings of the National Academy of Sciences of the United States of America 112: 13970-5, 2015.  [Article] 

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19. Ferreira PG, Dermitzakis ET

Immune response is a personal matter. eLife 2: e00899, 2013.  [Editorial Material] 

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20. Alves-Rodrigues I, Ferreira PG, Moldón A, Vivancos AP, Hidalgo E, Guigó R, Ayté J

Spatiotemporal Control of Forkhead Binding to DNA Regulates the Meiotic Gene Expression Program. Cell reports 14: 885-95, 2016.  [Article] 

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21. Codony-Servat C, Ferreira PG, Ferreira PG, Vilardell J, Eyras E

RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae. RNA (New York, N.Y.) 18: 1103-15, 2012.  [Article] 

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Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing. Scientific reports 6: 32406, 2016.  [Article] 

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23. Arous C, Ferreira PG, Dermitzakis ET, Halban PA

Short term exposure of beta cells to low concentrations of interleukin-1ß improves insulin secretion through focal adhesion and actin remodeling and regulation of gene expression. The Journal of biological chemistry 290: 14491, 2015.  [Correction] 

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24. Vieira J, Ferreira PG, Aguiar B, Fonseca NA, Vieira CP

Evolutionary patterns at the RNase based gametophytic self - incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus). BMC evolutionary biology 10: 200, 2010.  [Article] 

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Tandem RNA chimeras contribute to transcriptome diversity in human population and are associated with intronic genetic variants. PloS one 9: e104567, 2014.  [Article] 

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