1. Patin E, Lopez M, Grollemund R, Verdu P, Harmant C, Quach H, Laval G, Perry GH, Barreiro LB, Froment A, Heyer E, Massougbodji A, Fortes-Lima C, Migot-Nabias F, Bellis G, Dugoujon JM, Pereira JB, Fernandes V, Pereira L, Van der Veen L, Mouguiama-Daouda P, Bustamante CD, Hombert JM, Quintana-Murci L

Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America. Science (New York, N.Y.) 356: 543-546, 2017.  [Article] 

 doi: 10.1126/science.aal1988 PMID: 28473590.

 

2. Behar DM, Yunusbayev B, Metspalu M, Metspalu E, Rosset S, Parik J, Rootsi S, Chaubey G, Kutuev I, Yudkovsky G, Khusnutdinova EK, Balanovsky O, Semino O, Pereira L, Comas D, Gurwitz D, Bonne-Tamir B, Parfitt T, Hammer MF, Skorecki K, Villems R

The genome-wide structure of the Jewish people. Nature 466: 238-42, 2010.  [Article] 

 doi: 10.1038/nature09103 PMID: 20531471.

 

3. Jagadeesan A, Gunnarsdóttir ED, Ebenesersdóttir SS, Guðmundsdóttir VB, Thordardottir EL, Einarsdóttir MS, Jónsson H, Dugoujon JM, Fortes-Lima C, Migot-Nabias F, Massougbodji A, Bellis G, Pereira L, Másson G, Kong A, Stefánsson K, Helgason A

Reconstructing an African haploid genome from the 18th century. Nature genetics 50: 199-205, 2018.  [Article] 

 doi: 10.1038/s41588-017-0031-6 PMID: 29335549.

 

4. Fernandes V, Brucato N, Ferreira JC, Pedro N, Cavadas B, Ricaut FX, Alshamali F, Pereira L

Genome-Wide Characterization of Arabian Peninsula Populations: Shedding Light on the History of a Fundamental Bridge between Continents. Molecular biology and evolution 36: 575-586, 2019.  [Article] 

 doi: 10.1093/molbev/msz005 PMID: 30649405.

 

5. Raveane A, Aneli S, Montinaro F, Athanasiadis G, Barlera S, Birolo G, Boncoraglio G, Di Blasio AM, Di Gaetano C, Pagani L, Parolo S, Paschou P, Piazza A, Stamatoyannopoulos G, Angius A, Brucato N, Cucca F, Hellenthal G, Mulas A, Peyret-Guzzon M, Zoledziewska M, Baali A, Bycroft C, Cherkaoui M, Chiaroni J, Di Cristofaro J, Dina C, Dugoujon JM, Galan P, Giemza J, Kivisild T, Mazieres S, Melhaoui M, Metspalu M, Myers S, Pereira L, Ricaut FX, Brisighelli F, Cardinali I, Grugni V, Lancioni H, Pascali VL, Torroni A, Semino O, Matullo G, Achilli A, Olivieri A, Capelli C

Population structure of modern-day Italians reveals patterns of ancient and archaic ancestries in Southern Europe. Science advances 5: eaaw3492, 2019.  [Article] 

 doi: 10.1126/sciadv.aaw3492 PMID: 31517044.

 

6. Behar DM, Metspalu E, Kivisild T, Achilli A, Hadid Y, Tzur S, Pereira L, Amorim A, Quintana-Murci L, Majamaa K, Herrnstadt C, Howell N, Balanovsky O, Kutuev I, Pshenichnov A, Gurwitz D, Bonne-Tamir B, Torroni A, Villems R, Skorecki K

The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event. American journal of human genetics 78: 487-97, 2006.  [Article] 

 doi: 10.1086/500307 PMID: 16404693.

 

7. Pereira L, Freitas F, Fernandes V, Pereira JB, Costa MD, Costa S, Máximo V, Macaulay V, Rocha R, Samuels DC

The diversity present in 5140 human mitochondrial genomes. American journal of human genetics 84: 628-40, 2009.  [Article] 

 doi: 10.1016/j.ajhg.2009.04.013 PMID: 19426953.

 

8. Pereira L, Samuels DC

mtDNA Data Mining in GenBank Needs Surveying Response American journal of human genetics 85: 933-933, 2009.  [Letter] 

 doi: 10.1016/j.ajhg.2009.10.022.

 

9. Goios A, Pereira L, Bogue M, Macaulay V, Amorim A

mtDNA phylogeny and evolution of laboratory mouse strains. Genome research 17: 293-8, 2007.  [Article] 

 doi: 10.1101/gr.5941007 PMID: 17284675.

 

10. Pala M, Olivieri A, Achilli A, Accetturo M, Metspalu E, Reidla M, Tamm E, Karmin M, Reisberg T, Hooshiar Kashani B, Perego UA, Carossa V, Gandini F, Pereira JB, Soares P, Angerhofer N, Rychkov S, Al-Zahery N, Carelli V, Sanati MH, Houshmand M, Hatina J, Macaulay V, Pereira L, Woodward SR, Davies W, Gamble C, Baird D, Semino O, Villems R, Torroni A, Richards MB

Mitochondrial DNA signals of late glacial recolonization of europe from near eastern refugia. American journal of human genetics 90: 915-24, 2012.  [Article] 

 doi: 10.1016/j.ajhg.2012.04.003 PMID: 22560092.

 

11. Fernandes V, Alshamali F, Alves M, Costa MD, Pereira JB, Silva NM, Cherni L, Harich N, Cerny V, Soares P, Richards MB, Pereira L

The Arabian cradle: mitochondrial relicts of the first steps along the southern route out of Africa. American journal of human genetics 90: 347-55, 2012.  [Article] 

 doi: 10.1016/j.ajhg.2011.12.010 PMID: 22284828.

 

12. Costa MD, Pereira JB, Pala M, Fernandes V, Olivieri A, Achilli A, Perego UA, Rychkov S, Naumova O, Hatina J, Woodward SR, Eng KK, Macaulay V, Carr M, Soares P, Pereira L, Richards MB

A substantial prehistoric European ancestry amongst Ashkenazi maternal lineages. Nature communications 4: 2543, 2013.  [Article] 

 doi: 10.1038/ncomms3543 PMID: 24104924.

 

13. Pereira L, Soares P, Radivojac P, Li B, Samuels DC

Comparing Phylogeny and the Predicted Pathogenicity of Protein Variations Reveals Equal Purifying Selection across the Global Human mtDNA Diversity. American journal of human genetics 88: 433-9, 2011.  [Article] 

 doi: 10.1016/j.ajhg.2011.03.006 PMID: 21457906.

 

14. Soares P, Alshamali F, Pereira JB, Fernandes V, Silva NM, Afonso C, Costa MD, Musilová E, Macaulay V, Richards MB, Cerny V, Pereira L

The Expansion of mtDNA Haplogroup L3 within and out of Africa. Molecular biology and evolution 29: 915-27, 2012.  [Article] 

 doi: 10.1093/molbev/msr245 PMID: 22096215.

 

15. Rosser ZH, Zerjal T, Hurles ME, Adojaan M, Alavantic D, Amorim A, Amos W, Armenteros M, Arroyo E, Barbujani G, Beckman G, Beckman L, Bertranpetit J, Bosch E, Bradley DG, Brede G, Cooper G, Côrte-Real HB, de Knijff P, Decorte R, Dubrova YE, Evgrafov O, Gilissen A, Glisic S, Gölge M, Hill EW, Jeziorowska A, Kalaydjieva L, Kayser M, Kivisild T, Kravchenko SA, Krumina A, Kucinskas V, Lavinha J, Livshits LA, Malaspina P, Maria S, McElreavey K, Meitinger TA, Mikelsaar AV, Mitchell RJ, Nafa K, Nicholson J, Nørby S, Pandya A, Parik J, Patsalis PC, Pereira L, Peterlin B, Pielberg G, Prata MJ, Previderé C, Roewer L, Rootsi S, Rubinsztein DC, Saillard J, Santos FR, Stefanescu G, Sykes BC, Tolun A, Villems R, Tyler-Smith C, Jobling MA

Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language. American journal of human genetics 67: 1526-43, 2000.  [Article] 

 PMID: 11078479.

 

16. Behar DM, Villems R, Soodyall H, Blue-Smith J, Pereira L, Metspalu E, Scozzari R, Makkan H, Tzur S, Comas D, Bertranpetit J, Quintana-Murci L, Tyler-Smith C, Wells RS, Rosset S, Consortium Genographic

The dawn of human matrilineal diversity. American journal of human genetics 82: 1130-40, 2008.  [Article] 

 doi: 10.1016/j.ajhg.2008.04.002 PMID: 18439549.

 

17. Pereira L, Richards M, Goios A, Alonso A, Albarrán C, Garcia O, Behar DM, Gölge M, Hatina J, Al-Gazali L, Bradley DG, Macaulay V, Amorim A

High-resolution mtDNA evidence for the late-glacial resettlement of Europe from an Iberian refugium. Genome research 15: 19-24, 2005.  [Article] 

 doi: 10.1101/gr.3182305 PMID: 15632086.

 

18. Achilli A, Olivieri A, Soares P, Lancioni H, Kashani BH, Perego UA, Nergadze SG, Carossa V, Santagostino M, Capomaccio S, Felicetti M, Al-Achkar W, Penedo MC, Verini-Supplizi A, Houshmand M, Woodward SR, Semino O, Silvestrelli M, Giulotto E, Pereira L, Bandelt HJ, Torroni A

Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication. Proceedings of the National Academy of Sciences of the United States of America 109: 2449-54, 2012.  [Article] 

 doi: 10.1073/pnas.1111637109 PMID: 22308342.

 

19. Pereira F, Soares P, Carneiro J, Pereira L, Richards MB, Samuels DC, Amorim A

Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region. Molecular biology and evolution 25: 2759-70, 2008.  [Article] 

 doi: 10.1093/molbev/msn225 PMID: 18845547.

 

20. Pereira F, Davis SJ, Pereira L, McEvoy B, Bradley DG, Amorim A

Genetic signatures of a Mediterranean influence in Iberian Peninsula sheep husbandry. Molecular biology and evolution 23: 1420-6, 2006.  [Article] 

 doi: 10.1093/molbev/msl007 PMID: 16672283.

 

21. Pereira L, Gonçalves J, Franco-Duarte R, Silva J, Rocha T, Arnold C, Richards M, Macaulay V

No evidence for an mtDNA role in sperm motility: data from complete sequencing of asthenozoospermic males. Molecular biology and evolution 24: 868-74, 2007.  [Article] 

 doi: 10.1093/molbev/msm004 PMID: 17218641.

 

22. Sierra B, Triska P, Soares P, Garcia G, Perez AB, Aguirre E, Oliveira M, Cavadas B, Regnault B, Alvarez M, Ruiz D, Samuels DC, Sakuntabhai A, Pereira L, Guzman MG

OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans. PLoS pathogens 13: e1006220, 2017.  [Article] 

 doi: 10.1371/journal.ppat.1006220 PMID: 28241052.

 

23. Melo M, Gaspar da Rocha A, Batista R, Vinagre J, Martins MJ, Costa G, Ribeiro C, Carrilho F, Leite V, Lobo C, Cameselle-Teijeiro JM, Cavadas B, Pereira L, Sobrinho-Simões M, Soares P

TERT, BRAF, and NRAS in Primary Thyroid Cancer and Metastatic Disease. The Journal of clinical endocrinology and metabolism 102: 1898-1907, 2017.  [Article] 

 doi: 10.1210/jc.2016-2785 PMID: 28323937.

 

24. Pereira L, Soares P, Triska P, Rito T, van der Waerden A, Li B, Radivojac P, Samuels DC

Global human frequencies of predicted nuclear pathogenic variants and the role played by protein hydrophobicity in pathogenicity potential. Scientific reports 4: 7155, 2014.  [Article] 

 doi: 10.1038/srep07155 PMID: 25412673.

 

25. Cerný V, Mulligan CJ, Fernandes V, Silva NM, Alshamali F, Non A, Harich N, Cherni L, El Gaaied AB, Al-Meeri A, Pereira L

Internal diversification of mitochondrial haplogroup R0a reveals post-last glacial maximum demographic expansions in South Arabia. Molecular biology and evolution 28: 71-8, 2011.  [Article] 

 doi: 10.1093/molbev/msq178 PMID: 20643865.

 

26. Cerny V, Pereira L, Musilová E, Kujanová M, Vasíková A, Blasi P, Garofalo L, Soares P, Diallo I, Brdicka R, Novelletto A

Genetic structure of pastoral and farmer populations in the african sahel. Molecular biology and evolution 28: 2491-500, 2011.  [Article] 

 doi: 10.1093/molbev/msr067 PMID: 21436121.

 

27. Pereira L, Dupanloup I, Rosser ZH, Jobling MA, Barbujani G

Y-chromosome mismatch distributions in Europe. Molecular biology and evolution 18: 1259-71, 2001.  [Article] 

 PMID: 11420365.

 

28. Silva M, Alshamali F, Silva P, Carrilho C, Mandlate F, Jesus Trovoada M, Cerný V, Pereira L, Soares P

60,000 years of interactions between Central and Eastern Africa documented by major African mitochondrial haplogroup L2. Scientific reports 5: 12526, 2015.  [Article] 

 doi: 10.1038/srep12526 PMID: 26211407.

 

29. Cavadas B, Soares P, Camacho R, Brandão A, Costa MD, Fernandes V, Pereira JB, Rito T, Samuels DC, Pereira L

Fine Time Scaling of Purifying Selection on Human Nonsynonymous mtDNA Mutations Based on the Worldwide Population Tree and Mother-Child Pairs. Human mutation 36: 1100-11, 2015.  [Article] 

 doi: 10.1002/humu.22849 PMID: 26252938.

 

30. Martins RG, Nunes JB, Máximo V, Soares P, Peixoto J, Catarino T, Rito T, Soares P, Pereira L, Sobrinho-Simões M, Santos AP, Couto J, Henrique R, Matos-Loureiro J, Dias P, Torres I, Lima J

A founder SDHB mutation in Portuguese paraganglioma patients. Endocrine-related cancer 20: L23-6, 2013.  [Letter] 

 doi: 10.1530/ERC-12-0399 PMID: 24092654.

 

31. Pereira JB, Costa MD, Vieira D, Pala M, Bamford L, Harich N, Cherni L, Alshamali F, Hatina J, Rychkov S, Stefanescu G, King T, Torroni A, Soares P, Pereira L, Richards MB

Reconciling evidence from ancient and contemporary genomes: a major source for the European Neolithic within Mediterranean Europe. Proceedings. Biological sciences 284: ., 2017.  [Article] 

 doi: 10.1098/rspb.2016.1976 PMID: 28330913.

 

32. Soares PA, Trejaut JA, Rito T, Cavadas B, Hill C, Eng KK, Mormina M, Brandão A, Fraser RM, Wang TY, Loo JH, Snell C, Ko TM, Amorim A, Pala M, Macaulay V, Bulbeck D, Wilson JF, Gusmão L, Pereira L, Oppenheimer S, Lin M, Richards MB

Resolving the ancestry of Austronesian-speaking populations. Human genetics 135: 309-26, 2016.  [Article] 

 doi: 10.1007/s00439-015-1620-z PMID: 26781090.

 

33. Brandão A, Eng KK, Rito T, Cavadas B, Bulbeck D, Gandini F, Pala M, Mormina M, Hudson B, White J, Ko TM, Saidin M, Zafarina Z, Oppenheimer S, Richards MB, Pereira L, Soares P

Quantifying the legacy of the Chinese Neolithic on the maternal genetic heritage of Taiwan and Island Southeast Asia. Human genetics 135: 363-76, 2016.  [Article] 

 doi: 10.1007/s00439-016-1640-3 PMID: 26875094.

 

34. Pereira L, Cerný V, Cerezo M, Silva NM, Hájek M, Vasíková A, Kujanová M, Brdicka R, Salas A

Linking the sub-Saharan and West Eurasian gene pools: maternal and paternal heritage of the Tuareg nomads from the African Sahel. European journal of human genetics : EJHG 18: 915-23, 2010.  [Article] 

 doi: 10.1038/ejhg.2010.21 PMID: 20234393.

 

35. Oliveira M, Lert-Itthiporn W, Cavadas B, Fernandes V, Chuansumrit A, Anunciação O, Casademont I, Koeth F, Penova M, Tangnararatchakit K, Khor CC, Paul R, Malasit P, Matsuda F, Simon-Lorière E, Suriyaphol P, Pereira L, Sakuntabhai A

Joint ancestry and association test indicate two distinct pathogenic pathways involved in classical dengue fever and dengue shock syndrome. PLoS neglected tropical diseases 12: e0006202, 2018.  [Article] 

 doi: 10.1371/journal.pntd.0006202 PMID: 29447178.

 

36. Pereira F, Pereira L, Van Asch B, Bradley DG, Amorim A

The mtDNA catalogue of all Portuguese autochthonous goat (Capra hircus) breeds: high diversity of female lineages at the western fringe of European distribution. Molecular ecology 14: 2313-8, 2005.  [Article] 

 doi: 10.1111/j.1365-294X.2005.02594.x PMID: 15969716.

 

37. Cerný V, Fernandes V, Costa MD, Hájek M, Mulligan CJ, Pereira L

Migration of Chadic speaking pastoralists within Africa based on population structure of Chad Basin and phylogeography of mitochondrial L3f haplogroup. BMC evolutionary biology 9: 63, 2009.  [Article] 

 doi: 10.1186/1471-2148-9-63 PMID: 19309521.

 

38. Navarro-Costa P, Pereira L, Alves C, Gusmão L, Proença C, Marques-Vidal P, Rocha T, Correia SC, Jorge S, Neves A, Soares AP, Nunes J, Calhaz-Jorge C, Amorim A, Plancha CE, Gonçalves J

Characterizing partial AZFc deletions of the Y chromosome with amplicon-specific sequence markers. BMC genomics 8: 342, 2007.  [Article] 

 doi: 10.1186/1471-2164-8-342 PMID: 17903263.

 

39. Navarro-Costa P, Pereira L, Alves C, Gusmão L, Proença C, Marques-Vidal P, Rocha T, Correia SC, Jorge S, Neves A, Soares AP, Nunes J, Calhaz-Jorge C, Amorim A, Plancha CE, Gonçalves J

Sequence architecture and deletion mechanisms vary widely in the partial AZFc deletion pool of the Y chromosome. BMC genomics 8: 342, 2007.  [] 

.

 

40. Pereira L, Gonçalves J, Bandelt HJ

Mutation C11994T in the mitochondrial ND4 gene is not a cause of low sperm motility in Portugal. Fertility and sterility 89: 738-41, 2008.  [Editorial Material] 

 doi: 10.1016/j.fertnstert.2007.03.048 PMID: 17517394.

 

41. Rito T, Ferreira J, Cavadas B, Soares P, Oliveira O, Richards MB, Duarte R, Pereira L, Correia-Neves M

Association of Leukotriene A4 Hydrolase with Tuberculosis Susceptibility Using Genomic Data in Portugal. Microorganisms 7: ., 2019.  [Article] 

 doi: 10.3390/microorganisms7120650 PMID: 31817174.

 

42. Freitas F, Oliveira S, Rocha R, Pereira L

mtDNA GeneExtractor: A computer tool for mtDNA gene/region information extraction. Mitochondrion 9: 36-40, 2009.  [Article] 

 doi: 10.1016/j.mito.2008.11.003 PMID: 19070686.

 

43. Marques MS, Figueiredo C, Cavadas B, Mendes N, Pereira L, Carneiro F, Leite M

Afadin is a new target of Helicobacter pylori infection that induces epithelial-mesenchymal transition in gastric cells Helicobacter 23: ., 2018.  [Meeting Abstract] 

.

 

44. Sahakyan H, Hooshiar Kashani B, Tamang R, Kushniarevich A, Francis A, Costa MD, Pathak AK, Khachatryan Z, Sharma I, van Oven M, Parik J, Hovhannisyan H, Metspalu E, Pennarun E, Karmin M, Tamm E, Tambets K, Bahmanimehr A, Reisberg T, Reidla M, Achilli A, Olivieri A, Gandini F, Perego UA, Al-Zahery N, Houshmand M, Sanati MH, Soares P, Rai E, Šarac J, Šaric T, Sharma V, Pereira L, Fernandes V, Cerný V, Farjadian S, Singh DP, Azakli H, Üstek D, Ekomasova Trofimova N, Kutuev I, Litvinov S, Bermisheva M, Khusnutdinova EK, Rai N, Singh M, Singh VK, Reddy AG, Tolk HV, Cvjetan S, Lauc LB, Rudan P, Michalodimitrakis EN, Anagnou NP, Pappa KI, Golubenko MV, Orekhov V, Borinskaya SA, Kaldma K, Schauer MA, Simionescu M, Gusar V, Grechanina E, Govindaraj P, Voevoda M, Damba L, Sharma S, Singh L, Semino O, Behar DM, Yepiskoposyan L, Richards MB, Metspalu M, Kivisild T, Thangaraj K, Endicott P, Chaubey G, Torroni A, Villems R

Origin and spread of human mitochondrial DNA haplogroup U7. Scientific reports 7: 46044, 2017.  [Article] 

 doi: 10.1038/srep46044 PMID: 28387361.

 

45. Alonso A, Albarran C, Martín P, García P, Capilla J, García O, de la Rua C, Izaguirre N, Pereira F, Pereira L, Amorim A, Sancho M

Usefulness of microchip electrophoresis for the analysis of mitochondrial DNA in forensic and ancient DNA studies. Electrophoresis 27: 5101-9, 2006.  [Article] 

 doi: 10.1002/elps.200600331 PMID: 17120261.

 

46. Triska P, Soares P, Patin E, Fernandes V, Cerny V, Pereira L

Extensive Admixture and Selective Pressure Across the Sahel Belt. Genome biology and evolution 7: 3484-95, 2015.  [Article] 

 doi: 10.1093/gbe/evv236 PMID: 26614524.

 

47. Brehm A, Pereira L, Kivisild T, Amorim A

Mitochondrial portraits of the Madeira and Açores archipelagos witness different genetic pools of its settlers. Human genetics 114: 77-86, 2003.  [Article] 

 doi: 10.1007/s00439-003-1024-3 PMID: 14513360.

 

48. Marques MS, Melo J, Cavadas B, Mendes N, Pereira L, Carneiro F, Figueiredo C, Leite M

Afadin Downregulation by Helicobacter pylori Induces Epithelial to Mesenchymal Transition in Gastric Cells. Frontiers in microbiology 9: 2712, 2018.  [Article] 

 doi: 10.3389/fmicb.2018.02712 PMID: 30473688.

 

49. Rito T, Vieira D, Silva M, Conde-Sousa E, Pereira L, Mellars P, Richards MB, Soares P

A dispersal of Homo sapiens from southern to eastern Africa immediately preceded the out-of-Africa migration. Scientific reports 9: 4728, 2019.  [Article] 

 doi: 10.1038/s41598-019-41176-3 PMID: 30894612.

 

50. Tamm E, Di Cristofaro J, Mazières S, Pennarun E, Kushniarevich A, Raveane A, Semino O, Chiaroni J, Pereira L, Metspalu M, Montinaro F

Genome-wide analysis of Corsican population reveals a close affinity with Northern and Central Italy. Scientific reports 9: 13581, 2019.  [Article] 

 doi: 10.1038/s41598-019-49901-8 PMID: 31537848.

 

51. Gomes S, Cavadas B, Ferreira JC, Marques PI, Monteiro C, Sucena M, Sousa C, Vaz Rodrigues L, Teixeira G, Pinto P, Tavares de Abreu T, Bárbara C, Semedo J, Mota L, Carvalho AS, Matthiesen R, Pereira L, Seixas S

Profiling of lung microbiota discloses differences in adenocarcinoma and squamous cell carcinoma. Scientific reports 9: 12838, 2019.  [Article] 

 doi: 10.1038/s41598-019-49195-w PMID: 31492894.

 

52. Costa MD, Cherni L, Fernandes V, Freitas F, Ammar El Gaaied AB, Pereira L

Data from complete mtDNA sequencing of Tunisian centenarians: Testing haplogroup association and the "golden mean" to longevity. Mechanisms of ageing and development 130: 222-6, 2009.  [Article] 

 doi: 10.1016/j.mad.2008.12.001 PMID: 19133286.

 

53. Alshamali F, Pereira L, Budowle B, Poloni ES, Currat M

Local population structure in Arabian Peninsula revealed by Y-STR diversity. Human heredity 68: 45-54, 2009.  [Article] 

 doi: 10.1159/000210448 PMID: 19339785.

 

54. Silva NM, Pereira L, Poloni ES, Currat M

Human Neutral Genetic Variation and Forensic STR Data. PloS one 7: e49666, 2012.  [Article] 

 doi: 10.1371/journal.pone.0049666 PMID: 23185401.

 

55. Brucato N, Fernandes V, Kusuma P, Cerný V, Mulligan CJ, Soares P, Rito T, Besse C, Boland A, Deleuze JF, Cox MP, Sudoyo H, Stoneking M, Pereira L, Ricaut FX

Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia. Genome biology and evolution 11: 748-758, 2019.  [Article] 

 doi: 10.1093/gbe/evz028 PMID: 30715341.

 

56. Pereira L, Silva NM, Franco-Duarte R, Fernandes V, Pereira JB, Costa MD, Martins H, Soares P, Behar DM, Richards MB, Macaulay V

Population expansion in the North African late Pleistocene signalled by mitochondrial DNA haplogroup U6. BMC evolutionary biology 10: 390, 2010.  [Article] 

 doi: 10.1186/1471-2148-10-390 PMID: 21176127.

 

57. Harich N, Costa MD, Fernandes V, Kandil M, Pereira JB, Silva NM, Pereira L

The trans-Saharan slave trade - clues from interpolation analyses and high-resolution characterization of mitochondrial DNA lineages. BMC evolutionary biology 10: 138, 2010.  [Article] 

 doi: 10.1186/1471-2148-10-138 PMID: 20459715.

 

58. Hernandez CL, Pita G, Cavadas B, Dugoujon J, Novelletto A, Pereira L, Calderon R

Where Europe and Africa meet: human genomic history of the western Mediterranean European journal of human genetics : EJHG 27: 657-657, 2019.  [Meeting Abstract] 

.

 

59. Rito T, Richards MB, Fernandes V, Alshamali F, Cerny V, Pereira L, Soares P

The First Modern Human Dispersals across Africa. PloS one 8: e80031, 2013.  [Article] 

 doi: 10.1371/journal.pone.0080031 PMID: 24236171.

 

60. Soares P, Abrantes D, Rito T, Thomson N, Radivojac P, Li B, Macaulay V, Samuels DC, Pereira L

Evaluating purifying selection in the mitochondrial DNA of various mammalian species. PloS one 8: e58993, 2013.  [Article] 

 doi: 10.1371/journal.pone.0058993 PMID: 23533597.

 

61. Goios A, Gusmão L, Rocha AM, Fonseca A, Pereira L, Bogue M, Amorim A

Identification of mouse inbred strains through mitochondrial DNA single-nucleotide extension. Electrophoresis 29: 4795-802, 2008.  [Article] 

 doi: 10.1002/elps.200800313 PMID: 19053077.

 

62. Cavadas B, Pereira JB, Correia M, Fernandes V, Eloy C, Sobrinho-Simões M, Soares P, Samuels DC, Máximo V, Pereira L

Genomic and transcriptomic characterization of the mitochondrial-rich oncocytic phenotype on a thyroid carcinoma background. Mitochondrion 46: 123-133, 2019.  [Article] 

 doi: 10.1016/j.mito.2018.04.001 PMID: 29631022.

 

63. Fernandes F, Pereira L, Freitas AT

CSA: an efficient algorithm to improve circular DNA multiple alignment. BMC bioinformatics 10: 230, 2009.  [Article] 

 doi: 10.1186/1471-2105-10-230 PMID: 19627599.

 

64. Pereira L, Soares P, Máximo V, Samuels DC

Somatic mitochondrial DNA mutations in cancer escape purifying selection and high pathogenicity mutations lead to the oncocytic phenotype: pathogenicity analysis of reported somatic mtDNA mutations in tumors. BMC cancer 12: 53, 2012.  [Article] 

 doi: 10.1186/1471-2407-12-53 PMID: 22299657.

 

65. Celestino R, Nome T, Pestana A, Hoff AM, Gonçalves AP, Pereira L, Cavadas B, Eloy C, Bjøro T, Sobrinho-Simões M, Skotheim RI, Soares P

CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension. BMC cancer 18: 68, 2018.  [Article] 

 doi: 10.1186/s12885-017-3948-3 PMID: 29321030.

 

66. Dupanloup I, Pereira L, Bertorelle G, Calafell F, Prata MJ, Amorim A, Barbujani G

A recent shift from polygyny to monogamy in humans is suggested by the analysis of worldwide Y-chromosome diversity. Journal of molecular evolution 57: 85-97, 2003.  [Article] 

 doi: 10.1007/s00239-003-2458-x PMID: 12962309.

 

67. Fernandes V, Triska P, Pereira JB, Alshamali F, Rito T, Machado A, Fajkošová Z, Cavadas B, Cerný V, Soares P, Richards MB, Pereira L

Genetic stratigraphy of key demographic events in arabia. PloS one 10: e0118625, 2015.  [Article] 

 doi: 10.1371/journal.pone.0118625 PMID: 25738654.

 

68. Hernández CL, Soares P, Dugoujon JM, Novelletto A, Rodríguez JN, Rito T, Oliveira M, Melhaoui M, Baali A, Pereira L, Calderón R

Early Holocenic and Historic mtDNA African Signatures in the Iberian Peninsula: The Andalusian Region as a Paradigm. PloS one 10: e0139784, 2015.  [Article] 

 doi: 10.1371/journal.pone.0139784 PMID: 26509580.

 

69. Tavares C, Coelho MJ, Eloy C, Melo M, da Rocha AG, Pestana A, Batista R, Ferreira LB, Rios E, Selmi-Ruby S, Cavadas B, Pereira L, Sobrinho Simões M, Soares P

NIS expression in thyroid tumors, relation with prognosis clinicopathological and molecular features. Endocrine connections 7: 78-90, 2018.  [Article] 

 doi: 10.1530/EC-17-0302 PMID: 29298843.

 

70. Silva M, Oliveira M, Vieira D, Brandão A, Rito T, Pereira JB, Fraser RM, Hudson B, Gandini F, Edwards C, Pala M, Koch J, Wilson JF, Pereira L, Richards MB, Soares P

A genetic chronology for the Indian Subcontinent points to heavily sex-biased dispersals. BMC evolutionary biology 17: 88, 2017.  [Article] 

 doi: 10.1186/s12862-017-0936-9 PMID: 28335724.

 

71. Canberk S, Pereira L, Batista R, Soares P, Maximo V, Simoes MS

DICER1 alterations are more frequent in oncocytic, follicular and rare aggressive variants than in classical papillary thyroid carcinoma Virchows Archiv 473: S67-S67, 2018.  [Meeting Abstract] 

.

 

72. Kulichová I, Fernandes V, Deme A, Novácková J, Stenzl V, Novelletto A, Pereira L, Cerný V

Internal diversification of non-Sub-Saharan haplogroups in Sahelian populations and the spread of pastoralism beyond the Sahara. American journal of physical anthropology 164: 424-434, 2017.  [Article] 

 doi: 10.1002/ajpa.23285 PMID: 28736914.

 

73. Andreassen R, Pereira L, Dupuy BM, Mevaag B

Icelandic population data for the STR loci in the AMPFlSTR SGM Plus system and the PowerPlex Y-system. Forensic science international. Genetics 4: e101-3, 2010.  [Article] 

 doi: 10.1016/j.fsigen.2009.08.011 PMID: 20457044.

 

74. Mesquita P, Freire AF, Lopes N, Gomes R, Azevedo D, Barros R, Pereira B, Cavadas B, Pópulo H, Boaventura P, David L, Pereira L, Almeida R

Expression and Clinical Relevance of SOX9 in Gastric Cancer. Disease markers 2019: 8267021, 2019.  [Article] 

 doi: 10.1155/2019/8267021 PMID: 31275454.

 

75. Musilová E, Fernandes V, Silva NM, Soares P, Alshamali F, Harich N, Cherni L, Gaaied AB, Al-Meeri A, Pereira L, Cerný V

Population history of the Red Sea-genetic exchanges between the Arabian Peninsula and East Africa signaled in the mitochondrial DNA HV1 haplogroup. American journal of physical anthropology 145: 592-8, 2011.  [Article] 

 doi: 10.1002/ajpa.21522 PMID: 21660931.

 

76. Trovoada MJ, Pereira L, Gusmão L, Abade A, Amorim A, Prata MJ

Pattern of mtDNA variation in three populations from São Tomé e Príncipe. Annals of human genetics 68: 40-54, 2004.  [Article] 

 PMID: 14748829.

 

77. Pereira L, Alshamali F, Andreassen R, Ballard R, Chantratita W, Cho NS, Coudray C, Dugoujon JM, Espinoza M, González-Andrade F, Hadi S, Immel UD, Marian C, Gonzalez-Martin A, Mertens G, Parson W, Perone C, Prieto L, Takeshita H, Rangel Villalobos H, Zeng Z, Zhivotovsky L, Camacho R, Fonseca NA

PopAffiliator: online calculator for individual affiliation to a major population group based on 17 autosomal short tandem repeat genotype profile. International journal of legal medicine 125: 629-36, 2011.  [Article] 

 doi: 10.1007/s00414-010-0472-2 PMID: 20552217.

 

78. Goios A, Prieto L, Amorim A, Pereira L

Specificity of mtDNA-directed PCR-influence of NUclear MTDNA insertion (NUMT) contamination in routine samples and techniques. International journal of legal medicine 122: 341-5, 2008.  [Article] 

 doi: 10.1007/s00414-007-0191-5 PMID: 17874117.

 

79. Chaouali M, Fernandes V, Ghazouani E, Pereira L, Kochkar R

Association of STAT4, TGFß1, SH2B3 and PTPN22 polymorphisms with autoimmune hepatitis. Experimental and molecular pathology 105: 279-284, 2018.  [Article] 

 doi: 10.1016/j.yexmp.2018.10.001 PMID: 30291855.

 

80. Cerný V, Kulichová I, Poloni ES, Nunes JM, Pereira L, Mayor A, Sanchez-Mazas A

Genetic history of the African Sahelian populations. HLA 91: 153-166, 2018.  [Review] 

 doi: 10.1111/tan.13189 PMID: 29215793.

 

81. Al-Abri A, Podgorná E, Rose JI, Pereira L, Mulligan CJ, Silva NM, Bayoumi R, Soares P, Cerný V

Pleistocene-Holocene boundary in Southern Arabia from the perspective of human mtDNA variation. American journal of physical anthropology 149: 291-8, 2012.  [Article] 

 doi: 10.1002/ajpa.22131 PMID: 22927010.

 

82. Cherni L, Fernandes V, Pereira JB, Costa MD, Goios A, Frigi S, Yacoubi-Loueslati B, Amor MB, Slama A, Amorim A, El Gaaied AB, Pereira L

Post-last glacial maximum expansion from Iberia to North Africa revealed by fine characterization of mtDNA H haplogroup in Tunisia American journal of physical anthropology 139: 253-260, 2008.  [Article] 

 doi: 10.1002/ajpa.20979 PMID: 19090581.

 

83. Cerný V, Mulligan CJ, Rídl J, Zaloudková M, Edens CM, Hájek M, Pereira L

Regional differences in the distribution of the sub-Saharan, West Eurasian, and South Asian mtDNA lineages in Yemen. American journal of physical anthropology 136: 128-37, 2008.  [Article] 

 doi: 10.1002/ajpa.20784 PMID: 18257024.

 

84. Kujanová M, Pereira L, Fernandes V, Pereira JB, Cerný V

Near Eastern Neolithic genetic input in a small oasis of the Egyptian Western Desert American journal of physical anthropology 1: 0, 2009.  [Article] 

 doi: 10.1002/ajpa.21078 PMID: 19425100.

 

85. Cerný V, Pereira L, Kujanová M, Vasíková A, Hájek M, Morris M, Mulligan CJ

Out of Arabia-the settlement of island Soqotra as revealed by mitochondrial and Y chromosome genetic diversity. American journal of physical anthropology 138: 439-47, 2009.  [Article] 

 doi: 10.1002/ajpa.20960 PMID: 19012329.

 

86. Pereira L, Gonçalves J, Goios A, Rocha T, Amorim A

Human mtDNA haplogroups and reduced male fertility: real association or hidden population substructuring. International journal of andrology 28: 241-7, 2005.  [Article] 

 doi: 10.1111/j.1365-2605.2005.00539.x PMID: 16048637.

 

87. Brehm A, Pereira L, Bandelt HJ, Prata MJ, Amorim A

Mitochondrial portrait of the Cabo Verde archipelago: the Senegambian outpost of Atlantic slave trade. Annals of human genetics 66: 49-60, 2002.  [Article] 

 doi: doi:10.1017/S0003480001001002 PMID: 12015000.

 

88. Pereira L, Gusmão L, Alves C, Amorim A, Prata MJ

Bantu and European Y-lineages in Sub-Saharan Africa. Annals of human genetics 66: 369-78, 2002.  [Article] 

 doi: doi:10.1017/S0003480002001306 PMID: 12485470.

 

89. Goios A, Meirinhos J, Rocha R, Lopes R, Amorim A, Pereira L

RepeatAround: A software tool for finding and visualizing repeats in circular genomes and its application to a human mtDNA database. Mitochondrion 6: 218-24, 2006.  [Article] 

 doi: 10.1016/j.mito.2006.06.001 PMID: 16854633.

 

90. Alonso A, Alves C, Suárez-Mier MP, Albarrán C, Pereira L, Fernández de Simón L, Martín P, García O, Gusmão L, Sancho M, Amorim A

Mitochondrial DNA haplotyping revealed the presence of mixed up benign and neoplastic tissue sections from two individuals on the same prostatic biopsy slide. Journal of clinical pathology 58: 83-6, 2005.  [Article] 

 doi: 10.1136/jcp.2004.017673 PMID: 15623490.

 

91. Pereira L, Prata MJ, Amorim A

Diversity of mtDNA lineages in Portugal: not a genetic edge of European variation. Annals of human genetics 64: 491-506, 2000.  [Article] 

 PMID: 11281213.

 

92. Pereira L, Macaulay V, Torroni A, Scozzari R, Prata MJ, Amorim A

Prehistoric and historic traces in the mtDNA of Mozambique: insights into the Bantu expansions and the slave trade. Annals of human genetics 65: 439-58, 2001.  [Article] 

 doi: doi:10.1017/S0003480001008855 PMID: 11806853.

 

93. Bandelt HJ, Alves-Silva J, Guimarães PE, Santos MS, Brehm A, Pereira L, Coppa A, Larruga JM, Rengo C, Scozzari R, Torroni A, Prata MJ, Amorim A, Prado VF, Pena SD

Phylogeography of the human mitochondrial haplogroup L3e: a snapshot of African prehistory and Atlantic slave trade. Annals of human genetics 65: 549-63, 2001.  [Article] 

 doi: doi:10.1017/S0003480001008892 PMID: 11851985.

 

94. Pereira L, Cunha C, Amorim A

Predicting sampling saturation of mtDNA haplotypes: an application to an enlarged Portuguese database. International journal of legal medicine 118: 132-6, 2004.  [Article] 

 doi: 10.1007/s00414-003-0424-1 PMID: 14872253.

 

95. Almeida LMCA, Silva R, Cavadas B, Lima J, Pereira L, Soares P, Sobrinho-Simões M, Lopes JM, Máximo V

GLUT1, MCT1/4 and CD147 overexpression supports the metabolic reprogramming in papillary renal cell carcinoma. Histology and histopathology 32: 1029-1040, 2017.  [Article] 

 doi: 10.14670/HH-11-863 PMID: 28028797.

 

96. Podgorna E, Soares P, Pereira L, Cerny V

The Genetic Impact of the Lake Chad Basin Population in North Africa as Documented by Mitochondrial Diversity and Internal Variation of the L3e5 Haplogroup Annals of human genetics  513-523, 2013.  [Article] 

 doi: 10.1111/ahg.12040.

 

97. Pereira L, Gusmão L, Prata MJ, Moto P, Trovoada MJ, Amorim A

Detection of additional structural variation at the FES/FPS system and population data from S. Tomé e Príncipe and North Portugal. International journal of legal medicine 112: 204-6, 1999.  [Article] 

 PMID: 10335889.

 

98. van Asch B, Pereira L, Pereira F, Santa-Rita P, Lima M, Amorim A

MtDNA diversity among four Portuguese autochthonous dog breeds: a fine-scale characterisation. BMC genetics 6: 37, 2005.  [Article] 

 doi: 10.1186/1471-2156-6-37 PMID: 15972107.

 

99. Goios A, Nogueira C, Pereira C, Vilarinho L, Amorim A, Pereira L

mtDNA single macrodeletions associated with myopathies: absence of haplogroup-related increased risk. Journal of inherited metabolic disease 28: 769-78, 2005.  [Article] 

 doi: 10.1007/s10545-005-0023-z PMID: 16151908.

 

100. Loueslati BY, Cherni L, Khodjet-Elkhil H, Ennafaa H, Pereira L, Amorim A, Ben Ayed F, Ben Ammar Elgaaied A

Islands inside an island: reproductive isolates on Jerba island. American journal of human biology : the official journal of the Human Biology Council 18: 149-53, 2006.  [Article] 

 doi: 10.1002/ajhb.20473 PMID: 16378336.

 

101. Amorim A, Pereira L

Pros and cons in the use of SNPs in forensic kinship investigation: a comparative analysis with STRs. Forensic science international 150: 17-21, 2005.  [Article] 

 doi: 10.1016/j.forsciint.2004.06.018 PMID: 15837005.

 

102. Cherni L, Pereira L, Goios A, Loueslati BY, Khodjet el Khil H, Gomes I, Gusmão L, Alves C, Slama A, Amorim A, Elgaaied AB

Y-chromosomal STR haplotypes in three ethnic groups and one cosmopolitan population from Tunisia. Forensic science international 152: 95-9, 2005.  [Article] 

 doi: 10.1016/j.forsciint.2005.02.007 PMID: 15939181.

 

103. Cherni L, Loueslati Yaâcoubi B, Pereira L, Alves C, Khodjet El Kill H, Ben Ammar El Gaaied A, Amorim A

Data for 15 autosomal STR markers (Powerplex 16 System) from two Tunisian populations: Kesra (Berber) and Zriba (Arab). Forensic science international 147: 101-6, 2005.  [Editorial Material] 

 doi: 10.1016/j.forsciint.2004.04.009 PMID: 15541599.

 

104. Pereira L, Prata MJ, Brión M, Jobling MA, Carracedo A, Amorim A

Clinal variation of YAP+ Y-chromosome frequencies in Western Iberia. Human biology; an international record of research 72: 937-44, 2000.  [Article] 

 PMID: 11236865.

 

105. Pereira L, Gusmão L, Prata MJ, Mota P, Trovoada MJ, Amorim A

Variation in STR loci of the human myelin basic protein gene: north Portugal and São Tomé e Príncipe. Human biology; an international record of research 72: 481-7, 2000.  [Article] 

 PMID: 10885193.

 

106. Frigi S, Pereira F, Pereira L, Yacoubi B, Gusmão L, Alves C, Khodjet el Khil H, Cherni L, Amorim A, El Gaaied A

Data for Y-chromosome haplotypes defined by 17 STRs (AmpFLSTR Yfiler) in two Tunisian Berber communities. Forensic science international 160: 80-3, 2006.  [Editorial Material] 

 doi: 10.1016/j.forsciint.2005.05.007 PMID: 16005592.

 

107. Pereira L, Richards M, Goios A, Alonso A, Albarrán C, Garcia O, Behar DM, Gölge M, Hatina J, Al-Gazali L, Bradley DG, Macaulay V, Amorim A

Evaluating the forensic informativeness of mtDNA haplogroup H sub-typing on a Eurasian scale. Forensic science international 159: 43-50, 2006.  [Article] 

 doi: 10.1016/j.forsciint.2005.06.008 PMID: 16076538.

 

108. Pereira L, Van Asch B, Amorim A

Standardisation of nomenclature for dog mtDNA D-loop: a prerequisite for launching a Canis familiaris database. Forensic science international 141: 99-108, 2004.  [Article] 

 doi: 10.1016/j.forsciint.2003.12.014 PMID: 15062947.

 

109. Goios A, Gusmão L, Rocha AM, Pereira L, Bogue M, Amorim A

A SNaPshot multiplex typing strategy for mtDNA identification of mouse inbred strains Forensic Sci Int: Genetics  596-597, 2008.  [] 

 doi: 10.1016/j.fsigss.2007.10.204.

 

110. Alves C, Amorim A, Gusmão L, Pereira L

VWA STR genotyping: further inconsistencies between Perkin-Elmer and Promega kits. International journal of legal medicine 115: 97-9, 2001.  [Article] 

 PMID: 11724440.

 

111. Oliveira M, Ferreira J, Fernandes V, Sakuntabhai A, Pereira L

Host ancestry and dengue fever: from mapping of candidate genes to prediction of worldwide genetic risk FUTURE VIROLOGY 13:  647-655, 2018.  [Article] 

 doi: 10.2217/fvl-2018-0073.

 

112. Alves C, Gusmão L, Pereira L, Amorim A

STR data (CD4, CSF1PO, F13A01, FES/FPS, MBPB, TH01, TPOX) from North Portugal. Forensic science international 123: 76-7, 2001.  [Article] 

 PMID: 11731202.

 

113. Alonso A, Salas A, Albarrán C, Arroyo E, Castro A, Crespillo M, di Lonardo AM, Lareu MV, Cubría CL, Soto ML, Lorente JA, Semper MM, Palacio A, Paredes M, Pereira L, Lezaun AP, Brito JP, Sala A, Vide MC, Whittle M, Yunis JJ, Gómez J

Results of the 1999-2000 collaborative exercise and proficiency testing program on mitochondrial DNA of the GEP-ISFG: an inter-laboratory study of the observed variability in the heteroplasmy level of hair from the same donor. Forensic science international 125: 1-7, 2002.  [Article] 

 PMID: 11852196.

 

114. Pereira L, Prata MJ, Amorim A

Mismatch distribution analysis of Y-STR haplotypes as a tool for the evaluation of identity-by-state proportions and significance of matches--the European picture. Forensic science international 130: 147-55, 2002.  [Article] 

 PMID: 12477636.

 

115. Cherni L, Loueslati BY, Pereira L, Ennafaâ H, Amorim A, El Gaaied AB

Female gene pools of Berber and Arab neighboring communities in central Tunisia: microstructure of mtDNA variation in North Africa. Human biology; an international record of research 77: 61-70, 2005.  [Article] 

 PMID: 16114817.

 

116. Pereira L, Cunha C, Alves C, Amorim A

African female heritage in Iberia: a reassessment of mtDNA lineage distribution in present times. Human biology; an international record of research 77: 213-29, 2005.  [Article] 

 PMID: 16201138.

 

117. Behar DM, Metspalu E, Kivisild T, Rosset S, Tzur S, Hadid Y, Yudkovsky G, Rosengarten D, Pereira L, Amorim A, Kutuev I, Gurwitz D, Bonne-Tamir B, Villems R, Skorecki K

Counting the founders: the matrilineal genetic ancestry of the Jewish Diaspora. PloS one 3: e2062, 2008.  [Article] 

 doi: 10.1371/journal.pone.0002062 PMID: 18446216.

 

118. Martins Haidé, Oms F. Xavier, Pereira Luísa, Pike Alistair W. G., Rowsell Keri, Zilhão João

Radiocarbon Dating the Beginning of the Neolithic in Iberia: New Results, New Problems Journal of Mediterranean Archaeology 18: 1, 2015.  [Article] 

 doi: 10.1558/jmea.v28i1.27503.

 

119. Gusmão L, Amorim A, Prata MJ, Pereira L, Lareu MV, Carracedo A

Failed PCR amplifications of MBP-STR alleles due to polymorphism in the primer annealing region. International journal of legal medicine 108: 313-5, 1996.  [Article] 

 PMID: 8793639.

 

120. Alves C, Gusmão L, Pereira L, Amorim A

Multiplex STR genotyping: comparison study, population data and new sequence information. Progress in Forensic Genetics 9 1239: 131-135, 2003.  [Proceedings Paper] 

.

 

121. Pereira L, Amorim A

Subdividing mtDNA haplogroup H based on coding-region polymorphisms - a study in Iberia Progress in Forensic Genetics 10  416-418, 2004.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(03)01651-0.

 

122. Pereira L, Alves C, Amorim A, Gusmão L

Genotyping inconsistencies and null alleles using AmpFLSTR (R) Identifiler (R) and Powerplex (R) 16 kits Progress in Forensic Genetics 10  176-178, 2004.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(03)01496-1.

 

123. Chaichoompu K, Abegaz F, Tongsima S, Shaw PJ, Sakuntabhai A, Pereira L, Van Steen K

IPCAPS: an R package for iterative pruning to capture population structure. Source code for biology and medicine 14: 2, 2019.  [Article] 

 doi: 10.1186/s13029-019-0072-6 PMID: 30936940.

 

124. Pereira L, Amorim A

How much more should the Y-STR Haplotype Reference Database increase to reach a pragmatic saturation level? Progress in Forensic Genetics 10  88-90, 2004.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(03)01653-4.

 

125. Cavadas B, Ferreira J, Camacho R, Fonseca NA, Pereira L

QmihR: Pipeline for quantification of microbiome in human RNA-seq Advances in Intelligent Systems and Computing 616: 173-179, 2017.  [Proceedings Paper] 

 doi: 10.1007/978-3-319-60816-7_21.

 

126. Pereira L, Amorim A, Prata MJ

Phylogeny of the mtDNA haplogroup U6. Analysis of the sequences observed in North Africa and Iberia Progress in Forensic Genetics 9  1, 2003.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(02)00553-8.

 

127. Pereira L, Gusmão L, Amorim A, Prata MJ

Insights from pattern of mtDNA variation into the genetic history of Sao Tome e Principe Progress in Forensic Genetics 10  377-379, 2004.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(03)01633-9.

 

128. Pereira L, Amorim A, Prata MJ

An evaluation of the proportion of identical Y-STR haplotypes due to recurrent mutation Progress in Forensic Genetics 9  57-60, 2003.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(02)00554-X.

 

129. Pereira L, Alves C, Amorim A, Gusmão L

African STR data based on a newly developed tetraplex fluorescent system (CD4, F13A01, FES and MBPB) Progress in Forensic Genetics 10  133-135, 2004.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(03)01712-6.

 

130. Pereira L, Amorim A

Is selection at mtDNA really a major concern? Progress in Forensic Genetics 10  109-111, 2004.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(03)01838-7.

 

131. Pereira L, Macaulay V, Prata MJ, Amorim A

Differential slave trade to Europe and Brazil from the western and eastern African coasts as registered in the mtDNA pool Progress in Forensic Genetics 9  49-52, 2003.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(02)00552-6.

 

132. Pereira L, Prata MJ, Jobling M, Amorim A

Analysis of the Y-chromosome and mitochondrial DNA pools in Portugal. Archaeogenetic 1: 1, 2000.  [] 

.

 

133. Brión M, Lareu MV, Pereira L, González-Neira A, Salas A, Prata MJ, Amorim A, Carracedo A

Y chromosome lineages in Iberians: construction of highly informative haplotypes using biallelic markers, STRs and the minisatellite MSY1. Progress in Forensic Genetics 8 8: 263-265, 2000.  [Proceedings Paper] 

.

 

134. Pereira L, Prata MJ, Amorim A

 Analysis of mitochondrial DNA hypervariable regions I and II in a North Portuguese population. Progress in Forensic Genetics 8 8: 338-340, 2000.  [Proceedings Paper] 

.

 

135. Gusmão L, Alves C, Pereira L, Prata MJ, Amorim A

GATA C4 allele 17 as a marker for sub-Saharan origin of Y-chromosome lineages Progress in Forensic Genetics 10  281-283, 2004.  [Proceedings Paper] 

 doi: 10.1016/S0531-5131(03)01493-6.

 

136. Pereira L, Brión M, Prata MJ, Jobling MA, Carracedo A, Amorim A

Gradient of Y chromosome haplogroup 21 across the Western Iberia. Progress in Forensic Genetics 8 8: 281-283, 2000.  [Proceedings Paper] 

.

 

137. Alshamali F, Kundu B, Pereira L

Investigating the resolution of ancestry testing in geographic regions characterized by high population admixture Forensic science international. Genetics Supplement Series 7: 12-13, 2019.  [Article] 

 doi: 10.1016/j.fsigss.2019.09.005.